Index

A | B | C | D | E | F | H | I | L | M | N | P | R | S | T | U | V | X

A

atom_to_site_index_mapping() (mosaic.api.MosaicFragment method)
(mosaic.api.MosaicUniverse method)
atom_to_template_index_mapping() (mosaic.api.MosaicUniverse method)
atoms (mosaic.api.MosaicFragment attribute)

B

bond_index_array() (mosaic.api.MosaicUniverse method)
bonds (mosaic.api.MosaicFragment attribute)

C

cell_parameter_array_shape (mosaic.api.MosaicUniverse attribute)
cell_parameters (mosaic.api.MosaicConfiguration attribute)
cell_shape (mosaic.api.MosaicUniverse attribute)
configuration
data item
convention (mosaic.api.MosaicUniverse attribute)
crystallographic structures

D

data (mosaic.api.MosaicProperty attribute)
data item
configuration
label
property
selection
universe

E

element_shape (mosaic.api.MosaicProperty attribute)

F

fragments (mosaic.api.MosaicFragment attribute)

H

HDF5
HDF5Store (class in mosaic.hdf5)

I

indices (mosaic.api.MosaicSelection attribute)
is_equivalent() (mosaic.api.MosaicAtom method)
(mosaic.api.MosaicConfiguration method)
(mosaic.api.MosaicFragment method)
(mosaic.api.MosaicLabel method)
(mosaic.api.MosaicProperty method)
(mosaic.api.MosaicSelection method)
(mosaic.api.MosaicUniverse method)
is_polymer (mosaic.api.MosaicFragment attribute)

L

label
data item
label (mosaic.api.MosaicAtom attribute)
(mosaic.api.MosaicFragment attribute)
lattice_vectors() (mosaic.api.MosaicConfiguration method)

M

molecules (mosaic.api.MosaicUniverse attribute)
mosaic.api (module)
mosaic.array_model (module)
mosaic.hdf5 (module)
mosaic.immutable_model (module)
mosaic.mutable_model (module)
mosaic.xml_io (module)
MosaicAtom (class in mosaic.api)
MosaicConfiguration (class in mosaic.api)
MosaicDataItem (class in mosaic.api)
MosaicFragment (class in mosaic.api)
MosaicLabel (class in mosaic.api)
MosaicProperty (class in mosaic.api)
MosaicSelection (class in mosaic.api)
MosaicUniverse (class in mosaic.api)

N

name (mosaic.api.MosaicAtom attribute)
(mosaic.api.MosaicLabel attribute)
(mosaic.api.MosaicProperty attribute)
NMR structures
number_of_atoms (mosaic.api.MosaicAtom attribute)
(mosaic.api.MosaicFragment attribute)
(mosaic.api.MosaicSelection attribute)
(mosaic.api.MosaicUniverse attribute)
number_of_bonds (mosaic.api.MosaicFragment attribute)
(mosaic.api.MosaicUniverse attribute)
number_of_molecules (mosaic.api.MosaicUniverse attribute)
number_of_sites (mosaic.api.MosaicAtom attribute)
(mosaic.api.MosaicFragment attribute)
(mosaic.api.MosaicSelection attribute)
(mosaic.api.MosaicUniverse attribute)
number_of_template_atoms (mosaic.api.MosaicUniverse attribute)
number_of_template_sites (mosaic.api.MosaicUniverse attribute)

P

PDB
polymer_type (mosaic.api.MosaicFragment attribute)
positions (mosaic.api.MosaicConfiguration attribute)
property
data item

R

recursive_atom_iterator() (mosaic.api.MosaicFragment method)
(mosaic.api.MosaicUniverse method)
recursive_atom_path_iterator() (mosaic.api.MosaicFragment method)
recursive_bond_iterator() (mosaic.api.MosaicFragment method)
retrieve() (mosaic.hdf5.HDF5Store method)

S

selection
data item
site_to_atom_index_mapping() (mosaic.api.MosaicFragment method)
(mosaic.api.MosaicUniverse method)
site_to_template_index_mapping() (mosaic.api.MosaicUniverse method)
species (mosaic.api.MosaicFragment attribute)
store() (mosaic.hdf5.HDF5Store method)
(mosaic.xml_io.XMLWriter method)
strings (mosaic.api.MosaicLabel attribute)
symmetry_transformations (mosaic.api.MosaicUniverse attribute)

T

template_site_to_template_atom_index_mapping() (mosaic.api.MosaicUniverse method)
type (mosaic.api.MosaicAtom attribute)
(mosaic.api.MosaicLabel attribute)
(mosaic.api.MosaicProperty attribute)
(mosaic.api.MosaicSelection attribute)

U

units (mosaic.api.MosaicProperty attribute)
universe
data item
universe (mosaic.api.MosaicConfiguration attribute)
(mosaic.api.MosaicLabel attribute)
(mosaic.api.MosaicProperty attribute)
(mosaic.api.MosaicSelection attribute)

V

validate() (mosaic.api.MosaicAtom method)
(mosaic.api.MosaicConfiguration method)
(mosaic.api.MosaicFragment method)
(mosaic.api.MosaicLabel method)
(mosaic.api.MosaicProperty method)
(mosaic.api.MosaicSelection method)
(mosaic.api.MosaicUniverse method)
validate_equivalence() (mosaic.api.MosaicAtom method)
(mosaic.api.MosaicConfiguration method)
(mosaic.api.MosaicFragment method)
(mosaic.api.MosaicLabel method)
(mosaic.api.MosaicProperty method)
(mosaic.api.MosaicSelection method)
(mosaic.api.MosaicUniverse method)

X

XML
XMLReader (class in mosaic.xml_io)
XMLWriter (class in mosaic.xml_io)